miRBase entry: tcc-MIR319

Stem-loop tcc-MIR319


Accession
MI0017502
Description
Theobroma cacao tcc-MIR319 precursor miRNA
Gene family
MIPF0001104; MIR319

Literature search
0 open access papers mention tcc-MIR319
(0 sentences)

Sequence

ugagaaauaauuagaagugggggcuccuuucagccuaaaacagcuucaagauuuuggucuuguggccuaucuaagcucuucuugauauuugcUUUGGACUGAAGGGAGCUCCUaauucuuuauuuucuccggu
.((((((.....((((.((((((((((((((((.(((((.(((..((((((....((((....))))............))))))...))).))))).)))))))))))))))).))))....))))))....

Structure
---u      uaauu    g                c     a   -cu      --------uuuu    u 
    gagaaa     agaa ugggggcuccuuucag cuaaa cag   ucaaga            gguc u
    ||||||     |||| |||||||||||||||| ||||| |||   ||||||            ||||  
    cucuuu     ucuu aUCCUCGAGGGAAGUC GGUUU guu   aguucu            ccgg g
uggc      -uauu    a                A     c   uau      ucucgaaucuau    u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR319

Accession MIMAT0020418
Description Theobroma cacao tcc-miR319 mature miRNA
Sequence 93 - UUUGGACUGAAGGGAGCUCCU - 113
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108