miRBase entry: tcc-MIR390b

Stem-loop tcc-MIR390b


Accession
MI0017504
Description
Theobroma cacao tcc-MIR390b precursor miRNA
Gene family
MIPF0000101; MIR390


Sequence

aaaguaugggagaaucuguaAAGCUCAGGAGGGAUAGCGCCaucucgacgagguuguguuuuaaauguucaucagcuggcgcuaucuauccugaguuucauggguucuuccugcuaugug
..((((.((((((((((((.((((((((((.(((((((((((.((.((.((.(((........)))..)).)))).))))))))))).)))))))))).)))))))))))))))).....

Structure
---aa    u            a          G           u  c  c  -g   gug 
     agua gggagaaucugu AAGCUCAGGA GGAUAGCGCCa cu ga ga  guu   u
     |||| |||||||||||| |||||||||| ||||||||||| || || ||  |||    
     ucgu ccuucuugggua uuugaguccu ucuaucgcggu ga cu cu  uaa   u
gugua    -            c          a           c  -  a  ug   auu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR390b

Accession MIMAT0020420
Description Theobroma cacao tcc-miR390b mature miRNA
Sequence 21 - AAGCUCAGGAGGGAUAGCGCC - 41
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108