Stem-loop tcc-MIR393a

Accession

MI0017505

Description

Theobroma cacao tcc-MIR393a precursor miRNA

Gene family

MIPF0000083; MIR393

Sequence

gccaaguacuagaggaggcaUCCAAAGGGAUCGCAUUGAUCCuuuauuuucaacccuuucuucuuucucacaauuuuggaucaugcuaucccuuuggauuccuccuuugguuagcuuu
...(((((((((((((((.((((((((((((.((((.(((((...................................))))))))).)))))))))))).)))))))))))..)))).

Structure

gcc    --           c            C    U     uuuauuuucaacccuu 
   aagu  acuagaggagg aUCCAAAGGGAU GCAU GAUCC                u
   ||||  ||||||||||| |||||||||||| |||| |||||                c
   uucg  ugguuuccucc uagguuucccua cgua cuagg                u
--u    au           u            u    -     uuuuaacacucuuucu 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR393a

• Accession: MIMAT0020421
• Description: Theobroma cacao tcc-miR393a mature miRNA
• Sequence: 21 - UCCAAAGGGAUCGCAUUGAUCC - 42
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108