Stem-loop tcc-MIR393b

Accession

MI0017506

Description

Theobroma cacao tcc-MIR393b precursor miRNA

Gene family

MIPF0000083; MIR393

Sequence

uucuuaggcagguggagagcUCCAAAGGGAUCGCAUUGAUCuaauauuguuccuggauuaccgaaugaauucauggaggcaacugguauaagcuuuuguugauucaguucacucauuggaucaugcaaucccuucggaauuuuccaucaguagcucua
.......((.(((((((((.(((.(((((((.((((.((((((((........((((((........))))))..(((..((((((....(((....)))...))))))..))))))))))))))).))))))).))).))))))))).)).......

Structure

uucuuag  a         c   A       C    U        auuguuccuggauuaccgaaugaauucaug   gc      uaua   u 
       gc gguggagag UCC AAGGGAU GCAU GAUCuaau                              gag  aacugg    agc u
       || ||||||||| ||| ||||||| |||| ||||||||                              |||  ||||||    |||  
       ug cuaccuuuu agg uucccua cgua cuagguua                              cuc  uugacu    uug u
aucucga  a         a   c       a    -        ------------------------------   ac      -uag   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR393b

• Accession: MIMAT0020422
• Description: Theobroma cacao tcc-miR393b mature miRNA
• Sequence: 21 - UCCAAAGGGAUCGCAUUGAUC - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108