miRBase entry: tcc-MIR394a

Stem-loop tcc-MIR394a


Accession
MI0017507
Description
Theobroma cacao tcc-MIR394a precursor miRNA
Gene family
MIPF0000100; MIR394


Sequence

agggcuucuuacagaguuuaUUGGCAUUCUGUCCACCUCCcaucacagaaaaucccuuuccuuuccccucucuuucauggaggugggcauacugccaacugggcucuguuggcuucucuu
((((...((.((((((((((((((((...(((((((((((......(((.....................))).....)))))))))))...)))))).)))))))))).))...)))).

Structure
-    cuu  u          -      UUC           caucac   aaaucccuu 
 aggg   cu acagaguuua UUGGCA   UGUCCACCUCC      aga         u
 ||||   || |||||||||| ||||||   |||||||||||      |||         c
 ucuc   gg ugucucgggu aaccgu   acggguggagg      ucu         c
u    uuc  u          c      cau           -uacuu   cuccccuuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR394a

Accession MIMAT0020423
Description Theobroma cacao tcc-miR394a mature miRNA
Sequence 21 - UUGGCAUUCUGUCCACCUCC - 40
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108