Stem-loop tcc-MIR394b

Accession

MI0017508

Description

Theobroma cacao tcc-MIR394b precursor miRNA

Gene family

MIPF0000100; MIR394

Sequence

ggccuuguugcagagccaauUUGGCAUUCUGUCCACCUCCaugaaugcuucaugcaugauaccccaguucaaagucauagaucuuggaggcggccaguaugucaaacaggcucuguaaauuucuc
.......((((((((((..((((((((.(((.((.((((((.((((((((...((.((......))))...))).)))...)).)))))).)).))).))))))))..)))))))))).......

Structure

ggccuug          aa        U   U  A      u  ---   -   cau  a  au 
       uugcagagcc  uUUGGCAU CUG CC CCUCCa ga   aug cuu   gc ug  a
       ||||||||||  |||||||| ||| || |||||| ||   ||| |||   || ||   
       aaugucucgg  aaacugua gac gg ggaggu cu   uac gaa   ug ac  c
cucuuua          ac        u   c  c      u  aga   u   acu  -  cc 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR394b

• Accession: MIMAT0020424
• Description: Theobroma cacao tcc-miR394b mature miRNA
• Sequence: 21 - UUGGCAUUCUGUCCACCUCC - 40
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108