Stem-loop tcc-MIR395a

Accession

MI0017509

Description

Theobroma cacao tcc-MIR395a precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

1 open access papers mention tcc-MIR395a
(2 sentences)

Sequence

agagagucagcuguccucuggaguuccccugaccacuucacuagagguuuccuggacccuuaauaggaagaaaccugaccuaCUGAAGUGUUUGGGGGAACUCcuguuggcaccugacaaugu
.....(((((.((((..(.(((((((((((((.(((((((.((((((((((......(((....)))..)))))))...))).))))))).))))))))))))).)..)))).))))).....

Structure

agaga     c    cu u             c       c   ---       cuggac   u 
     gucag uguc  c ggaguuccccuga cacuuca uag   agguuuc      ccu a
     ||||| ||||  | ||||||||||||| ||||||| |||   |||||||      |||  
     caguc acgg  g cCUCAAGGGGGUU GUGAAGU auc   uccaaag      gga a
uguaa     c    uu u             U       C   cag       ----aa   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR395a

• Accession: MIMAT0020425
• Description: Theobroma cacao tcc-miR395a mature miRNA
• Sequence: 83 - CUGAAGUGUUUGGGGGAACUC - 103
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108