Stem-loop tcc-MIR396b

Accession

MI0017512

Description

Theobroma cacao tcc-MIR396b precursor miRNA

Gene family

MIPF0000047; MIR396

Sequence

acauggcccucuuuguauucUUCCACAGCUUUCUUGAACUGcuacuucuuagaucguuccuucuuguuggcggugauguugcaugugggcugcauacggguauguuguugcaguucaauaaagcugugggaagauacggacagggucaaag
...(((((((.((((((((.((((((((((((.(((((((((.((..(..............(((((..(((((..............)))))..)))))...)..)).))))))))).)))))))))))).)))))))).)))))))...

Structure

aca       c        c            C         u  uu uuagaucguuccuu     ug     gauguu 
   uggcccu uuuguauu UUCCACAGCUUU UUGAACUGc ac  c              cuugu  gcggu      g
   ||||||| |||||||| |||||||||||| ||||||||| ||  |              |||||  |||||       
   acuggga aggcauag agggugucgaaa aacuugacg ug  g              gggca  cgucg      c
gaa       c        a            u         u  uu -----------uau     ua     ggugua 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR396b

• Accession: MIMAT0020428
• Description: Theobroma cacao tcc-miR396b mature miRNA
• Sequence: 21 - UUCCACAGCUUUCUUGAACUG - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108