miRBase entry: tcc-MIR398a

Stem-loop tcc-MIR398a


Accession
MI0017517
Description
Theobroma cacao tcc-MIR398a precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
1 open access papers mention tcc-MIR398a
(1 sentences)

Sequence

uuaaugguggaggagcccaacaggagcgacaugagaacacauguggccacucuugaaggacaaaccuuauccuguguguuuugaUGUGUUCUCAGGUCGCCCCUGcagggcuuuccuucaccuuc
.....(((((((((((((..((((.(((((.(((((((((((..((((((.....((((.....)))).....))).)))...))))))))))).))))).))))..))))..)))))))))...

Structure
uuaau         --    aa    a     a           -gu   -   ucuug    a 
     gguggagga  gccc  cagg gcgac ugagaacacau   ggc cac     aagg c
     |||||||||  ||||  |||| ||||| |||||||||||   ||| |||     |||| a
     ccacuuccu  cggg  GUCC CGCUG ACUCUUGUGUa   uug gug     uucc a
--cuu         uu    ac    C     G           guu   u   uccua    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR398a

Accession MIMAT0020433
Description Theobroma cacao tcc-miR398a mature miRNA
Sequence 85 - UGUGUUCUCAGGUCGCCCCUG - 105
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108