Stem-loop tcc-MIR399a

Accession

MI0017519

Description

Theobroma cacao tcc-MIR399a precursor miRNA

Gene family

MIPF0000015; MIR399

Sequence

aucacuaagugaucuaguuguagggcuucucuccuuuggcagguuauguucaucgaaaauaaaucaagaucuaauucuucuauucaacaauaacuCGCCAAAGGAGAGUUGCCCUGuaacugauucgacuuaauaa
.....(((((((..((((((((((((..((((((((((((.(((((((((...............((((......))))......))).)))))).))))))))))))..))))))))))))..)).)))))....

Structure

aucac     -  uc            uu            a      -   caucgaaaauaaauc    uc 
     uaagu ga  uaguuguagggc  cucuccuuuggc gguuau guu               aaga  u
     ||||| ||  ||||||||||||  |||||||||||| |||||| |||               ||||   
     auuca cu  gucaauGUCCCG  GAGAGGAAACCG ucaaua caa               uucu  a
-aaua     g  ua            UU            C      a   ---------cuuauc    ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR399a

• Accession: MIMAT0020435
• Description: Theobroma cacao tcc-miR399a mature miRNA
• Sequence: 96 - CGCCAAAGGAGAGUUGCCCUG - 116
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108