Stem-loop tcc-MIR399b

Accession

MI0017520

Description

Theobroma cacao tcc-MIR399b precursor miRNA

Gene family

MIPF0000015; MIR399

Sequence

uucagggugcaacugcauuacagggcaagauuuccauuggcaggcagccacuuauaugugcacccaaacucauucauucauguggugugcccucUGCCAAAGGAGAUUUGCCCGGcaauucuuuuguacuacuua
.....(((((((..(.(((.(.(((((.(((((((.(((((((((((((((....(((................)))....))))).))))...)))))).)))))))))))).).))).)..))))))).....

Structure

uucag       cu c   a a     a       a      ---    -     uuau   ugcaccc 
     ggugcaa  g auu c gggca gauuucc uuggca   ggca gccac    aug       a
     |||||||  | ||| | ||||| ||||||| ||||||   |||| |||||    |||        
     ucauguu  c uaa G CCCGU UUAGAGG AACCGU   ccgu uggug    uac       a
auuca       uu u   c G     -       A      cuc    g     uacu   uuacuca 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR399b

• Accession: MIMAT0020436
• Description: Theobroma cacao tcc-miR399b mature miRNA
• Sequence: 95 - UGCCAAAGGAGAUUUGCCCGG - 115
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108