Stem-loop tcc-MIR399c

Accession

MI0017521

Description

Theobroma cacao tcc-MIR399c precursor miRNA

Gene family

MIPF0000015; MIR399

Sequence

uuucagcugcaguugcauuacagggcaaaucuucacuggcaggcagccacuuuggcuuaccaucaccugucaugcuuuuuuuuuuuuuuauugugcucucUGCCAAUGGAGAUUUGCCCAGcaauuccacugcaacauugg
.......((((((.(.(((.(.(((((((((((((.(((((((.(((.((..((((............))))....................))))).))))))).))))))))))))).).))).).)))))).......

Structure

uuucagc      u c   a a             c       c   c  ------------------uu    uuacc 
       ugcagu g auu c gggcaaaucuuca uggcagg agc ac                    uggc     a
       |||||| | ||| | ||||||||||||| ||||||| ||| ||                    ||||      
       acguca c uaa G CCCGUUUAGAGGU ACCGUcu ucg ug                    acug     u
gguuaca      c u   c A             A       c   -  uuauuuuuuuuuuuuuucgu    uccac 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR399c

• Accession: MIMAT0020437
• Description: Theobroma cacao tcc-miR399c mature miRNA
• Sequence: 101 - UGCCAAUGGAGAUUUGCCCAG - 121
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108