miRBase entry: tcc-MIR399d

Stem-loop tcc-MIR399d


Accession
MI0017522
Description
Theobroma cacao tcc-MIR399d precursor miRNA
Gene family
MIPF0000015; MIR399


Sequence

ucucuggugcaguugcauuacagggcaaagaucuccauuggcaggcugccacuuugggucacgaaccgaauuauguguuccuauagugugucuucUGCCAAAGGAGAUUUGCCCGGcaauucuuccgcauugauau
.....(((((.(..(.(((.(.(((((..(((((((.((((((((..((((((.((((.(((............)))..)))).)))).))..)))))))).)))))))))))).).))).)..).))))).....

Structure
ucucu     a uu c   a a     aa       a        cu  -    u    -u   gaacc 
     ggugc g  g auu c gggca  gaucucc uuggcagg  gc cacu uggg  cac     g
     ||||| |  | ||| | |||||  ||||||| ||||||||  || |||| ||||  |||      
     uuacg c  c uaa G CCCGU  UUAGAGG AACCGUcu  ug guga aucc  gug     a
uauag     c uu u   c G     --       A        uc  u    u    uu   uauua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR399d

Accession MIMAT0020438
Description Theobroma cacao tcc-miR399d mature miRNA
Sequence 96 - UGCCAAAGGAGAUUUGCCCGG - 116
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108