miRBase entry: tcc-MIR399f

Stem-loop tcc-MIR399f


Accession
MI0017524
Description
Theobroma cacao tcc-MIR399f precursor miRNA
Gene family
MIPF0000015; MIR399


Sequence

uguggaguugaggaauuacagagcaauucuccuucagcacaaaugcuuaugcuccuucauaguucuauuuUGCCAGAGGAGAUUUGCCCUGccauucacucacacaaugau
((((((((....((((..(((.((((.(((((((..(((.(((((.(((((......)))))...))))))))..))))))).)))).)))..)))))))).)))).....

Structure
-----    -    ugag    ua   a    u       ca   c     --c     cu 
     ugug gagu    gaau  cag gcaa ucuccuu  gca aaaug   uuaug  c
     |||| ||||    ||||  ||| |||| |||||||  ||| |||||   |||||   
     acac cuca    cuua  GUC CGUU AGAGGAG  CGU uuuau   gauac  c
uagua    a    ----    cc   C    U       AC   -     cuu     uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR399f

Accession MIMAT0020440
Description Theobroma cacao tcc-miR399f mature miRNA
Sequence 71 - UGCCAGAGGAGAUUUGCCCUG - 91
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108