miRBase entry: tcc-MIR399g

Stem-loop tcc-MIR399g


Accession
MI0017525
Description
Theobroma cacao tcc-MIR399g precursor miRNA
Gene family
MIPF0000015; MIR399


Sequence

ugugcaguugacgaauaacagugcaguccuucuuuggcacagagaagacauggcauacgugacuucuguuuUGCCAAAGGAGAAUUGCCCUGccauucauuccugcaguuac
..(((((..((.((((..(((.(((((.(((((((((((.(.(((((.((((.....)))).))))).)..))))))))))).))))).)))..)))).)).))))).....

Structure
---ug     uu  c    aa   u     c           -c g     a    g 
     ugcag  ga gaau  cag gcagu cuucuuuggca  a agaag caug c
     |||||  || ||||  ||| ||||| |||||||||||  | ||||| |||| a
     acguc  uu cuua  GUC CGUUA GAGGAAACCGU  u ucuuc gugc u
cauug     -c  a    cc   C     A           uu g     a    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR399g

Accession MIMAT0020441
Description Theobroma cacao tcc-miR399g mature miRNA
Sequence 72 - UGCCAAAGGAGAAUUGCCCUG - 92
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108