Stem-loop tcc-MIR399i

Accession

MI0017527

Description

Theobroma cacao tcc-MIR399i precursor miRNA

Gene family

MIPF0000015; MIR399

Sequence

gucaauaagcaaaccagucaaagggcaccucuccauuggcagguaauauugugauuacugcuguaauuaauuaugcaaagugggacuccccggcccugcacuucauuucacagacuUGCCAAAGGAGAGUUGCCCUGugacagauucagcuuaaugc
..((.(((((......((((.((((((.((((((.(((((((((....((((((((((....)))).......((((..((.((.....)).))..)))).......))))))))))))))).)))))).)))))).)))).......))))).)).

Structure

gu  a     -aaacca    a      c      a         aaua      uuacugcuguaauuaauua    aa  g  a 
  ca uaagc       guca agggca cucucc uuggcaggu    uuguga                   ugca  gu gg c
  || |||||       |||| |||||| |||||| |||||||||    ||||||                   ||||  || || u
  gu auucg       cagu UCCCGU GAGAGG AACCGUuca    gacacu                   acgu  cg cc c
-c  a     acuuaga    G      U      A         ----      ------------uuacuuc    cc  g  c 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR399i

• Accession: MIMAT0020443
• Description: Theobroma cacao tcc-miR399i mature miRNA
• Sequence: 117 - UGCCAAAGGAGAGUUGCCCUG - 137
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108