Stem-loop tcc-MIR530a

Accession

MI0017530

Description

Theobroma cacao tcc-MIR530a precursor miRNA

Gene family

MIPF0000521; MIR530

Sequence

ccaacaagucuccauuuaucUGCAUUUGCACCUGCACCUCuuucucuacacuuccagcagccagggagaugaacaacauucuccauggacgguugccgaaaucuuguugguuggacggggagaggugcagaugcaggugcagacaaauggccucuugguuuua
....((((...((((((.((((((((((((.((((((((((((((...((...((((((((((.(((((((.....)).))))).))).(((...))).....))))))).))...)))))))))))))).)))))))))))).))))))...))))......

Structure

--ccaa    ucu      a            C              cua  cuu       ---------------   g     -  a 
      caag   ccauuu ucUGCAUUUGCA CUGCACCUCuuucu   ca   ccagcag               cca ggaga ug a
      ||||   |||||| |||||||||||| ||||||||||||||   ||   |||||||               ||| ||||| || c
      guuc   gguaaa agacguggacgu gacguggagagggg   gu   gguuguu               ggu ccucu ac a
auuuug    ucc      c            a              cag  --u       cuaaagccguuggca   a     u  a 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR530a

• Accession: MIMAT0020446
• Description: Theobroma cacao tcc-miR530a mature miRNA
• Sequence: 21 - UGCAUUUGCACCUGCACCUC - 40
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108