Stem-loop tcc-MIR530b

Accession

MI0017531

Description

Theobroma cacao tcc-MIR530b precursor miRNA

Gene family

MIPF0000521; MIR530

Sequence

gcuaagauguagccuuuaucUGCAUUUGCACCUGCACCUUcuuguuuuuauuugguucacuucagcacccuucugcuuuagaaaccaaagcuugggcagauguguuugugguggaggaagauaagggccaagcaaagaggugcaggggcagcugcaggugaaugccauuuuggcuucu
(((((((((..((.((((((((((.((((.(((((((((((((((((((((((..((((((.((((((...(((((((.((.........)).))))))).))).))).))))))...))))))))).))))....)))))))))).)))).)))))))))).)))))))))))....

Structure

----         ua  c          U    A          ----    -         -gg      u   -   ccu       u  aaa 
    gcuaagaug  gc uuuaucUGCA UUGC CCUGCACCUU    cuug uuuuuauuu   uucacu cag cac   ucugcuu ag   c
    |||||||||  || |||||||||| |||| ||||||||||    |||| |||||||||   |||||| ||| |||   ||||||| ||   c
    cgguuuuac  cg aaguggacgu gacg ggacguggag    gaac gggaauaga   aggugg guu gug   agacggg uc   a
ucuu         --  u          c    g          aaac    c         agg      u   u   --u       u  gaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR530b

• Accession: MIMAT0020447
• Description: Theobroma cacao tcc-miR530b mature miRNA
• Sequence: 21 - UGCAUUUGCACCUGCACCUU - 40
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108