miRBase entry: tcc-MIR535

Stem-loop tcc-MIR535


Accession
MI0017532
Description
Theobroma cacao tcc-MIR535 precursor miRNA
Gene family
MIPF0000136; MIR535


Sequence

acagcuuuguacauaucauaUGACAACGAUAGAGAGCACGCuuguacacauccauguccuugcaagaaugccaacgagcgugcucucucucguugucaauugauaaugugucaaaucuca
..((.(((((((((((((..(((((((((.(((((((((((((((...(((.(.(((....))).).)))...))))))))))))))).)))))))))..)))).))))).)))).))..

Structure
ac  c    -     -    ua         U               aca   c a   c 
  ag uuug uacau auca  UGACAACGA AGAGAGCACGCuugu   cau c ugu c
  || |||| ||||| ||||  ||||||||| |||||||||||||||   ||| | |||  
  uc aaac gugua uagu  acuguugcu ucucucgugcgagca   gua g acg u
ac  u    u     a    ua         c               acc   a a   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR535

Accession MIMAT0020448
Description Theobroma cacao tcc-miR535 mature miRNA
Sequence 21 - UGACAACGAUAGAGAGCACGC - 41
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108