miRBase entry: cel-mir-4808

Stem-loop cel-mir-4808


Accession
MI0017538
Description
Caenorhabditis elegans cel-mir-4808 precursor miRNA


Sequence

43 reads, 4 reads per million, 13 experiments
GUAAGAUAGAUUAGUGCUUUCaauuauuucaaacgaAAGCUCUAUUCUCUCUUACAG
((((((.(((.(((.((((((.............)))))).))).))).))))))..

Structure
--      U   U   U      aauua 
  GUAAGA AGA UAG GCUUUC     u
  |||||| ||| ||| ||||||     u
  CAUUCU UCU AUC CGAAag     u
GA      C   U   U      caaac 


Annotation confidence Not enough data
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Genome context
chrX: 1872952-1873008 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from cel-mir-4808
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-4808-5p

Accession MIMAT0019991
Description Caenorhabditis elegans cel-miR-4808-5p mature miRNA
Sequence 1 - GUAAGAUAGAUUAGUGCUUUC - 21
Evidence experimental
Illumina [1]

Mature cel-miR-4808-3p

Accession MIMAT0019992
Description Caenorhabditis elegans cel-miR-4808-3p mature miRNA
Sequence 37 - AAGCUCUAUUCUCUCUUACAG - 57
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21085120
    Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs
    "Jan CH, Friedman RC, Ruby JG, Bartel DP"
    "Nature (2011) 469:97-101