miRBase entry: sko-mir-2007

Stem-loop sko-mir-2007


Accession
MI0017559
Description
Saccoglossus kowalevskii sko-mir-2007 precursor miRNA


Sequence

ugugugcguugcguugaugUAUUUCAGGCGUUUAUACUGGUGAuguuuguuauuacuuaucUCCAGUGUACACCUGAAAUAUaccaacaaaugcuuagac
.....(((((..((((.(((((((((((.((..(((((((.((((...((....)).)))).))))))))).))))))))))).)))).)))))......

Structure
-ugugu     gc    a           C  UU       U    uuu  u 
      gcguu  guug ugUAUUUCAGG GU  AUACUGG GAug   gu a
      |||||  |||| ||||||||||| ||  ||||||| ||||   ||  
      cguaa  caac aUAUAAAGUCC CA  UGUGACC cuau   ca u
cagauu     -a    c           A  --       U    --u  u 


Annotation confidence Not enough data
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Genome context
GL016937.1: 82896-82995 [+]

Database links

Mature sko-miR-2007-5p

Accession MIMAT0020023
Description Saccoglossus kowalevskii sko-miR-2007-5p mature miRNA
Sequence 20 - UAUUUCAGGCGUUUAUACUGGUGA - 43
Evidence experimental
454 [1]

Mature sko-miR-2007-3p

Accession MIMAT0020024
Description Saccoglossus kowalevskii sko-miR-2007-3p mature miRNA
Sequence 62 - UCCAGUGUACACCUGAAAUAU - 82
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27