miRBase entry: sko-mir-4828a

Stem-loop sko-mir-4828a


Accession
MI0017567
Description
Saccoglossus kowalevskii sko-mir-4828a precursor miRNA


Sequence

ccuggggcauacccuucagucuggauguguauuuucaucuguugguaucaaucuauacAGUAAAUACCAUUCAGAUUGCAgggugguccuucc
...(((((.((((((.(((((((((((.((((((....(((((((.......))).)))).))))))))))))))))).)))))))))))...

Structure
ccu     a      u           u      ucau    -   ua 
   ggggc uacccu cagucuggaug guauuu    cugu ugg  u
   ||||| |||||| ||||||||||| ||||||    |||| |||  c
   uccug gugggA GUUAGACUUAC CAUAAA    GAca auc  a
ccu     -      C           -      ---U    u   ua 


Annotation confidence Not enough data
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Genome context
GL013274.1: 368915-369007 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sko-mir-4828a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-4828a

Accession MIMAT0020036
Description Saccoglossus kowalevskii sko-miR-4828a mature miRNA
Sequence 59 - AGUAAAUACCAUUCAGAUUGCA - 80
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27