miRBase entry: sko-mir-4830c

Stem-loop sko-mir-4830c


Accession
MI0017574
Description
Saccoglossus kowalevskii sko-mir-4830c precursor miRNA


Sequence

agugaacaugacaggaucUCUUGAGAGCCAUAUGGAAGGaauugauguucaaaauggccuucuuguggccucaagaugucuuguuuuguuucca
.(.(((((.((((((((.(((((((.((((((.((((((..((((...)))).....))))))))))))))))))).)))))))).))))).).

Structure
a u     u        c       A      U      ---aa    u 
 g gaaca gacaggau UCUUGAG GCCAUA GGAAGG     uuga  
 | ||||| |||||||| ||||||| |||||| ||||||     |||| g
 c uuugu uuguucug agaacuc cggugu ucuucc     aacu  
a c     u        u       -      -      gguaa    u 


Annotation confidence Not enough data
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Genome context
GL014282.1: 5437-5530 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from sko-mir-4830c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-4830c

Accession MIMAT0020044
Description Saccoglossus kowalevskii sko-miR-4830c mature miRNA
Sequence 19 - UCUUGAGAGCCAUAUGGAAGG - 39
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27