miRBase entry: sko-mir-2006

Stem-loop sko-mir-2006


Accession
MI0017577
Description
Saccoglossus kowalevskii sko-mir-2006 precursor miRNA


Sequence

auggaauugaaugcaugugcgguauCAUCGCUAUCGUGUGUUCUUGUgugucuguacaacAAGCACACUACAUAGCGGUGCuuccacgcacguaaaucua
...........(((.((((.((...(((((((((.((((((.((((((((....))).))))).)))).)))))))))))...)).)))).)))......

Structure
auggaauugaa   a    c  uau         C  -    U     -   u 
           ugc ugug gg   CAUCGCUAU GU GUGU CUUGU gug c
           ||| |||| ||   ||||||||| || |||| ||||| |||  
           aug acgc cc   GUGGCGAUA CA CACA GAAca cau u
-----aucuaa   c    a  uuC         -  U    C     a   g 


Annotation confidence Not enough data
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Genome context
GL012026.1: 124705-124804 [+]

Database links

Mature sko-miR-2006-5p

Accession MIMAT0020047
Description Saccoglossus kowalevskii sko-miR-2006-5p mature miRNA
Sequence 26 - CAUCGCUAUCGUGUGUUCUUGU - 47
Evidence experimental
454 [1]

Mature sko-miR-2006-3p

Accession MIMAT0020048
Description Saccoglossus kowalevskii sko-miR-2006-3p mature miRNA
Sequence 61 - AAGCACACUACAUAGCGGUGC - 81
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27