miRBase entry: bfl-mir-4872a

Stem-loop bfl-mir-4872a


Accession
MI0017630
Description
Branchiostoma floridae bfl-mir-4872a precursor miRNA
Gene family
MIPF0001205; mir-4872


Sequence

cuagguucacaugcagUGCCGGGAUAACUAAAACUCUGAguucuguuuacuucagaguuuugguaccccggcuccauauggaacuacu
...(((((.((((..(.((((((...(((((((((((((((.......)).)))))))))))))..)))))).)..)))))))))...

Structure
cua     a    ca U      AUA             -  uc 
   gguuc caug  g GCCGGG   ACUAAAACUCUGA gu  u
   ||||| ||||  | ||||||   ||||||||||||| ||  g
   ucaag guau  c cggccc   ugguuuugagacu ca  u
uca     -    ac u      -ca             u  uu 


Annotation confidence Not enough data
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Genome context
GG666674.1: 862903-862990 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bfl-mir-4872a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-4872a

Accession MIMAT0020114
Description Branchiostoma floridae bfl-miR-4872a mature miRNA
Sequence 17 - UGCCGGGAUAACUAAAACUCUGA - 39
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27