miRBase entry: bfl-mir-4890

Stem-loop bfl-mir-4890


Accession
MI0017662
Description
Branchiostoma floridae bfl-mir-4890 precursor miRNA
Gene family
MIPF0001703; mir-4890


Sequence

cucugugcaguucuauGUGAUUAGCUAAGGUAGCUGAUAccauggcagccaggcuaccagcuccagagcugaucauauggaaggcacaagc
...(((((..((((((((((((((((..((.(((((.((((.(((...))))).)).)))))))..)))))))))))))))).)))))...

Structure
cuc     ag                AA  U     A  -  a   c 
   ugugc  uucuauGUGAUUAGCU  GG AGCUG UA cc ugg  
   |||||  ||||||||||||||||  || ||||| || || ||| a
   acacg  aagguauacuagucga  cc ucgac au gg acc  
cga     -g                ga  -     c  c  -   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GG666603.1: 5823503-5823593 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bfl-mir-4890
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-4890

Accession MIMAT0020479
Description Branchiostoma floridae bfl-miR-4890 mature miRNA
Sequence 17 - GUGAUUAGCUAAGGUAGCUGAUA - 39
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27