Stem-loop sequence cel-mir-4923a

Accession MI0017709
Description Caenorhabditis elegans miR-4923a stem-loop
Stem-loop 
--        uu c     a      g aa 
  guaagcaa  g uucuc uuuuca a  u
  ||||||||  | ||||| |||||| |  u
  cauuuguu  c gagag aaaagu u  g
ga        uu c     a      g au
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Genome context
Coordinates (WBcel215) Overlapping transcripts
X: 1879870-1879930 [+]
sense
Y59E1B.1 ; Y59E1B.1; intron 5
Y59E1B.1 ; Y59E1B.1; intron 5
Y59E1B.1 ; Y59E1B.1; intron 5
Clustered miRNAs
< 10kb from cel-mir-4923a
cel-mir-4807 X: 1872460-1872520 [+]
cel-mir-4808 X: 1872946-1873002 [+]
cel-mir-4809 X: 1873640-1873698 [+]
cel-mir-2220 X: 1873821-1873878 [+]
cel-mir-4810 X: 1875732-1875788 [+]
cel-mir-1018 X: 1879452-1879507 [+]
cel-mir-4925 X: 1879556-1879614 [+]
cel-mir-4923b X: 1879634-1879692 [+]
cel-mir-4923a X: 1879870-1879930 [+]
cel-mir-4921 X: 1879973-1880032 [+]

Mature sequence cel-miR-4923a

Accession MIMAT0020129
Sequence

39 -  

aaaagagagccuuuuguuuacag

 - 61

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Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:21177960 "Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans" Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC Genome Res. 21:286-300(2011).