miRBase entry: dme-mir-4940

Stem-loop dme-mir-4940


Accession
MI0017726
Description
Drosophila melanogaster dme-mir-4940 precursor miRNA


Sequence

59 reads, 11 reads per million, 19 experiments
uuaucgcaacuuaucgaucgggUGGCGGAUAUAGAUCAUUGGUUaucccuuaauuaaagcaAACAAGAUUUGUUUCGGCCGCCcgauuuuacauacaacgacacg
...(((.........(((((((((((.((.(((((((.(((......................)))))))))).)).)))))))))))..........)))....

Structure
-uua   -caacuuauc           G  U       A   GUUaucccuu 
    ucg          gaucgggUGGC GA AUAGAUC UUG          a
    |||          ||||||||||| || ||||||| |||           
    agc          uuagcCCGCCG CU UGUUUAG AAC          a
gcac   aacauacauu           G  U       -   AAacgaaauu 


Annotation confidence Not enough data
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Genome context
chr3L: 9144593-9144697 [+]

Database links

Mature dme-miR-4940-5p

Accession MIMAT0020146
Description Drosophila melanogaster dme-miR-4940-5p mature miRNA
Sequence 23 - UGGCGGAUAUAGAUCAUUGGUU - 44
Evidence experimental
Illumina [1]

Mature dme-miR-4940-3p

Accession MIMAT0020147
Description Drosophila melanogaster dme-miR-4940-3p mature miRNA
Sequence 62 - AACAAGAUUUGUUUCGGCCGCC - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21177969
    Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
    "Genome Res (2011) 21:203-215