miRBase entry: dme-mir-4949

Stem-loop dme-mir-4949


Accession
MI0017735
Description
Drosophila melanogaster dme-mir-4949 precursor miRNA


Sequence

84 reads, 46 reads per million, 31 experiments
auaaugcgccgccaucuugCGGCACACUCGCACACACACAcgugugccauucugguuuugcAGUGGUGUGCGUGUGUGCCUCGagucguugcgucacug
.....((((.((...((((.(((((((.(((((((.(((......((((...))))......)))))))))).))))))).))))..)).)))).....

Structure
auaau    c  cau    C       U       A   Acgugu    u 
     gcgc gc   cuug GGCACAC CGCACAC CAC      gcca  
     |||| ||   |||| ||||||| ||||||| |||      |||| u
     ugcg ug   gaGC CCGUGUG GCGUGUG GUG      uggu  
gucac    u  -cu    U       U       -   Acguuu    c 


Annotation confidence High
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Genome context
chr3R: 31219274-31219372 [-]

Database links

Mature dme-miR-4949-5p

Accession MIMAT0020160
Description Drosophila melanogaster dme-miR-4949-5p mature miRNA
Sequence 20 - CGGCACACUCGCACACACACA - 40
Evidence experimental
Illumina [1]
Database links

Mature dme-miR-4949-3p

Accession MIMAT0020161
Description Drosophila melanogaster dme-miR-4949-3p mature miRNA
Sequence 62 - AGUGGUGUGCGUGUGUGCCUCG - 83
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21177969
    Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
    "Genome Res (2011) 21:203-215