miRBase entry: dme-mir-4952

Stem-loop dme-mir-4952


Accession
MI0017738
Description
Drosophila melanogaster dme-mir-4952 precursor miRNA


Sequence

180 reads, 31 reads per million, 30 experiments
uccgggugcgcuggacgaucugaucuucucgggaGCCGGAUCCGGAUGUCGCGGCGAcgacgaggacgagugcacGCCGCCAUUCGAAUCGGGUAGcggggaugaucucauaacaccggucuacgu
.....(((.(((((...((..((((.((((.(..(((.(((.((((((..((((((...((........))...)))))))))))).))).)))..).)))).))))..))....))))).)))..

Structure
uccgg   c     -acg  cu    u    g ga   G   C      UC      Acg  gag 
     gug gcugg    au  gauc ucuc g  GCC GAU CGGAUG  GCGGCG   ac   g
     ||| |||||    ||  |||| |||| |  ||| ||| ||||||  ||||||   ||    
     cau uggcc    ua  cuag aggg c  UGG CUA GCUUAC  CGCCGc   ug   a
---ug   c     acaa  cu    u    g GA   G   A      --      acg  agc 


Annotation confidence High
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Genome context
chr3R: 22480813-22480938 [+]

Database links

Mature dme-miR-4952-5p

Accession MIMAT0020166
Description Drosophila melanogaster dme-miR-4952-5p mature miRNA
Sequence 35 - GCCGGAUCCGGAUGUCGCGGCGA - 57
Evidence experimental
Illumina [1]
Database links

Mature dme-miR-4952-3p

Accession MIMAT0020167
Description Drosophila melanogaster dme-miR-4952-3p mature miRNA
Sequence 76 - GCCGCCAUUCGAAUCGGGUAG - 96
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21177969
    Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
    "Genome Res (2011) 21:203-215