miRBase entry: dme-mir-4959

Stem-loop dme-mir-4959


Accession
MI0017745
Description
Drosophila melanogaster dme-mir-4959 precursor miRNA


Sequence

33 reads, 47 reads per million, 7 experiments
uguccgguuugaaccuucugugccggCUGGCCAUGAUUUGCAGCAGGUaucuccgagagcagaugauacgcagccaguugcguuucaugaccaaacggcaugugaagcgugcccugcg
.((..(((....(((((((((((((..(((.(((((..((((((.(((((((.(....).))))........))).))))))..))))).)))..))))))).)))).)))))..)).

Structure
u  cc   uuga  -    -       gC   C     UU      A   --------    c g 
 gu  ggu    ac cuuc ugugccg  UGG CAUGA  UGCAGC GGU        aucu c a
 ||  |||    || |||| |||||||  ||| |||||  |||||| |||        |||| |  
 cg  ccg    ug gaag guacggc  acc guacu  gcguug ccg        uaga g g
g  uc   ----  c    u       aa   a     uu      a   acgcauag    c a 


Annotation confidence Not enough data
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Genome context
chrX: 19169131-19169248 [-]

Database links

Mature dme-miR-4959-5p

Accession MIMAT0020179
Description Drosophila melanogaster dme-miR-4959-5p mature miRNA
Sequence 27 - CUGGCCAUGAUUUGCAGCAGGU - 48
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21177969
    Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
    "Genome Res (2011) 21:203-215