miRBase entry: dme-mir-4960

Stem-loop dme-mir-4960


Accession
MI0017746
Description
Drosophila melanogaster dme-mir-4960 precursor miRNA


Sequence

85 reads, 15 reads per million, 26 experiments
acacaaggccugccgcccaagaaacgcaagcccagaaguccggcagucgagaaucacgagggaCUGGGACCUUGGGCUUACGGUucucaguuuggcuugac
.....(((((....((...(((..((.((((((((..((((..(((((.............))))))))).)))))))).))..)))..))..)))))...

Structure
acaca     ugcc  cca   aa  c        aa    gg     gagaa 
     aggcc    gc   aga  cg aagcccag  gucc  caguc     u
     |||||    ||   |||  || ||||||||  ||||  |||||     c
     uucgg    ug   ucu  GC UUCGGGUU  CAGG  GUCag     a
--cag     --uu  -ac   UG  A        -C    --     ggagc 


Annotation confidence Not enough data
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Genome context
chrX: 569903-570003 [+]

Database links

Mature dme-miR-4960-3p

Accession MIMAT0020180
Description Drosophila melanogaster dme-miR-4960-3p mature miRNA
Sequence 64 - CUGGGACCUUGGGCUUACGGU - 84
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21177969
    Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
    "Genome Res (2011) 21:203-215