Stem-loop dme-mir-4961

Accession

MI0017747

Description

Drosophila melanogaster dme-mir-4961 precursor miRNA

Sequence

115 reads, 35 reads per million, 36 experiments

cgauauccaauaguagccaacucucucgcUCUCUAUGUGUAUGUAUGUAUCuugcuauccauaUAUGUAUAUCCAUAUCAGAGAGCcaggauugguugagaccauacgauauaacccgaaaccacacuggcca
..(((((......(((((((.((.((.((((((((((((.((((((((((..((.....)).)))))))))).))))).))))))).))))))))))).........))))).........(((...)))...

Structure

-------------------cg     ---caauag       c  u  c       -     U          Cu  c 
                     auauc         uagccaa uc cu gcUCUCU AUGUG AUGUAUGUAU  ug u
                     |||||         ||||||| || || ||||||| ||||| ||||||||||  || a
                     uauag         guugguu ag ga CGAGAGA UAUAC UAUAUGUAUa  ac u
accggucacaccaaagcccaa     cauaccaga       -  -  c       C     C          -u  c 

Annotation confidence Not enough data

Genome context

chrX: 1373623-1373755 [+]

Mature dme-miR-4961-5p

• Accession: MIMAT0020181
• Description: Drosophila melanogaster dme-miR-4961-5p mature miRNA
• Sequence: 30 - UCUCUAUGUGUAUGUAUGUAUC - 51
• Evidence: experimental ; Illumina [1]

Mature dme-miR-4961-3p

• Accession: MIMAT0020182
• Description: Drosophila melanogaster dme-miR-4961-3p mature miRNA
• Sequence: 64 - UAUGUAUAUCCAUAUCAGAGAGC - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215