Stem-loop sequence dme-mir-4968

Accession MI0017754
Description Drosophila melanogaster miR-4968 stem-loop
Stem-loop 
uuuuc   ag   c  gac    ----g   u    uu           ag  a     cacg   u      u  c  auu 
     cuc  agc gc   ugcu     gcg guua  guugcuguugc  cu gcugc    guu guugcu ca ug   a
     |||  ||| ||   ||||     ||| ||||  |||||||||||  || |||||    ||| |||||| || ||    
     gag  ucg cg   acga     cgu caau  caacgacaacg  ga cgacg    cga caacga gu ac   c
--cuu   ag   a  aua    ggaga   -    --           aa  -     acga   -      c  a  gcg
Get sequence
Deep sequencing
838 reads, 44 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
3L: 11545639-11545793 [-]
sense
FBtr0089331 ; Mob2-RD; intron 1
FBtr0089330 ; Mob2-RC; intron 1
FBtr0089332 ; Mob2-RA; intron 1
FBtr0089331 ; Mob2-RD; intron 1
FBtr0089330 ; Mob2-RC; intron 1
FBtr0089332 ; Mob2-RA; intron 1
FBtr0089331 ; Mob2-RD; intron 1
FBtr0089330 ; Mob2-RC; intron 1
FBtr0089332 ; Mob2-RA; intron 1

Mature sequence dme-miR-4968-5p

Accession MIMAT0020194
Sequence

49 -  

uagcugccacgguuuguugcuu

 - 70

Get sequence
Deep sequencing 212 reads, 23 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:21177969 "Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence" Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC Genome Res. 21:203-215(2011).