Stem-loop dme-mir-4978

Accession

MI0017764

Description

Drosophila melanogaster dme-mir-4978 precursor miRNA

Sequence

20 reads, 0 reads per million, 11 experiments

ggacuuuccacuuuucguuuggcugGCCUGGAAAAGCUCUCUUUCUcuauugccucuauggcucggcagcgcugggcgccuaauccgaauugcgagaaagauccgcuuuucgagccaaaaaccaucgaaaagccuggcaagcacaca
(..(((.((((((((((..(((.((((.(.(((((((..((((((((....(((.....)))((((..((((...)))).....)))).....))))))))...))))))).)))))....))).)))))))..))).)))..)...

Structure

--- ga   u   --       uu   ---c    C G       -UC        uauugccucuauggc    ---ca    u 
   g  cuu cca  cuuuucg  ugg    ugGC U GAAAAGC   UCUUUCUc               ucgg     gcgc  
   |  ||| |||  |||||||  |||    |||| | |||||||   ||||||||               ||||     |||| g
   c  gaa ggu  gaaaagc  acc    accg a cuuuucg   agaaagag               agcc     cgcg  
aca ac   c   cc       -u   aaaa    - g       ccu        ----------cguua    uaauc    g 

Annotation confidence Not enough data

Genome context

chr2R: 14005860-14006006 [-]

Mature dme-miR-4978-5p

• Accession: MIMAT0020210
• Description: Drosophila melanogaster dme-miR-4978-5p mature miRNA
• Sequence: 26 - GCCUGGAAAAGCUCUCUUUCU - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215