miRBase entry: egr-mir-2b

Stem-loop egr-mir-2b


Accession
MI0017777
Description
Echinococcus granulosus egr-mir-2b precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
1 open access papers mention egr-mir-2b
(3 sentences)

Sequence

ugucagucggUGUCCCAAGGGUGGUGAUCUACUcagugggagUAUCACAGCCCUGCUUGGGACAcaugcuggcagc
(((((((..(((((((((((((.((((..(((((.....))))))))).)))))...))))))))..)))))))..

Structure
--       cg        ---     G    UC     a 
  ugucagu  gUGUCCCA   AGGGU GUGA  UACUc g
  |||||||  ||||||||   ||||| ||||  ||||| u
  acggucg  cACAGGGU   UCCCG CACU  AUgag g
cg       ua        UCG     A    --     g 


Annotation confidence Not enough data
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Genome context
APAU02000027.1: 925755-925830 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from egr-mir-2b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature egr-miR-2b-3p

Accession MIMAT0020230
Description Echinococcus granulosus egr-miR-2b-3p mature miRNA
Sequence 43 - UAUCACAGCCCUGCUUGGGACA - 64
Evidence experimental
cloned [1], Illumina [2]

Mature egr-miR-2b-5p

Accession MIMAT0037420
Description Echinococcus granulosus egr-miR-2b-5p mature miRNA
Sequence 11 - UGUCCCAAGGGUGGUGAUCUACU - 33
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21219906
    Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
    "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
    "Int J Parasitol (2011) 41:439-448

  2. PubMed ID: 25656283
    microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
    Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
    Parasit Vectors (2015) 8:83