miRBase entry: egr-mir-2c

Stem-loop egr-mir-2c


Accession
MI0017778
Description
Echinococcus granulosus egr-mir-2c precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
1 open access papers mention egr-mir-2c
(3 sentences)

Sequence

gggcguuguucgUCGUCAACAUUGCCUGUAGACAcggguugcgaugUCACAGCCAAUAUUGAUGAAcgaguggcgucu
(((((((((((((((((((.((((.((((.((((((.....)).)))))))).)))).)))))).)))))))))))))

Structure
             -      C    C    A    -  g 
gggcguuguucgU CGUCAA AUUG CUGU GACA cg g
||||||||||||| |||||| |||| |||| |||| || u
ucugcggugagcA GUAGUU UAAC GACA CUgu gc u
             A      A    C    -    a  g 


Annotation confidence Not enough data
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Genome context
APAU02000027.1: 925649-925726 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from egr-mir-2c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature egr-miR-2c-5p

Accession MIMAT0020231
Description Echinococcus granulosus egr-miR-2c-5p mature miRNA
Sequence 13 - UCGUCAACAUUGCCUGUAGACA - 34
Evidence experimental
cloned [1], Illumina [2]

Mature egr-miR-2c-3p

Accession MIMAT0020232
Description Echinococcus granulosus egr-miR-2c-3p mature miRNA
Sequence 47 - UCACAGCCAAUAUUGAUGAA - 66
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 21219906
    Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
    "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
    "Int J Parasitol (2011) 41:439-448

  2. PubMed ID: 25656283
    microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
    Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
    Parasit Vectors (2015) 8:83