miRBase entry: egr-mir-124a

Stem-loop egr-mir-124a


Accession
MI0017785
Description
Echinococcus granulosus egr-mir-124a precursor miRNA
Gene family
MIPF0000021; mir-124

Literature search
3 open access papers mention egr-mir-124a
(5 sentences)

Sequence

ugucaagcacgugaaaugGCGUUCAACCUCGGAGCCUUUGUCagcgauugaauUAAGGCACGCGGUGAAUGCCAaaugcgaugcucc
.....(((((((....(((((((((.((.((..(((((..(((.....)))...))))).)).)))))))))))...))).))))..

Structure
uguca    -   gaaa         A  U  GA     -UG   g 
     agca cgu    ugGCGUUCA CC CG  GCCUU   UCa c
     |||| |||    ||||||||| || ||  |||||   ||| g
     ucgu gcg    ACCGUAAGU GG GC  CGGAA   agu a
---cc    a   -uaa         -  C  -A     Uua   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
APAU02000103.1: 18228-18314 [+]

Database links

Mature egr-miR-124a-3p

Accession MIMAT0020240
Description Echinococcus granulosus egr-miR-124a-3p mature miRNA
Sequence 54 - UAAGGCACGCGGUGAAUGCCA - 74
Evidence experimental
cloned [1], Illumina [2]

Mature egr-miR-124a-5p

Accession MIMAT0037426
Description Echinococcus granulosus egr-miR-124a-5p mature miRNA
Sequence 19 - GCGUUCAACCUCGGAGCCUUUGUC - 42
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21219906
    Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
    "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
    "Int J Parasitol (2011) 41:439-448

  2. PubMed ID: 25656283
    microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
    Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
    Parasit Vectors (2015) 8:83