miRBase entry: egr-mir-125

Stem-loop egr-mir-125


Accession
MI0017787
Description
Echinococcus granulosus egr-mir-125 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
2 open access papers mention egr-mir-125
(4 sentences)

Sequence

caugUCCCUGAGACCCUAGAGUUGUCcggauuuugcgaauccacauuucucacguggCAACUCUAAUGUCCCGGGUUAUgag
((((..((((.(((..((((((((((((((...((.(....).))....)).)).))))))))))..))).)))).))))..

Structure
--    UC    A   CC          -  -  -uuu  c a 
  caug  CCUG GAC  UAGAGUUGUC cg ga    ug g a
  ||||  |||| |||  |||||||||| || ||    || |  
  gUAU  GGGC CUG  AUCUCAACgg gc cu    ac c u
ga    -U    C   UA          u  a  cuuu  a c 


Annotation confidence Not enough data
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Genome context
APAU02000012.1: 1320788-1320869 [+]

Database links

Mature egr-miR-125-5p

Accession MIMAT0020243
Description Echinococcus granulosus egr-miR-125-5p mature miRNA
Sequence 5 - UCCCUGAGACCCUAGAGUUGUC - 26
Evidence experimental
cloned [1], Illumina [2]

Mature egr-miR-125-3p

Accession MIMAT0037427
Description Echinococcus granulosus egr-miR-125-3p mature miRNA
Sequence 58 - CAACUCUAAUGUCCCGGGUUAU - 79
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21219906
    Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
    "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
    "Int J Parasitol (2011) 41:439-448

  2. PubMed ID: 25656283
    microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
    Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
    Parasit Vectors (2015) 8:83