miRBase entry: emu-mir-2c

Stem-loop emu-mir-2c


Accession
MI0017801
Description
Echinococcus multilocularis emu-mir-2c precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

gggcguuguucgUCGUCAACAUUGCCUGUAGAcacggguugcgaugUCACAGCCAAUAUUGAUGAAcgaguggcgucu
(((((((((((((((((((.((((.((((.((((((.....)).)))))))).)))).)))))).)))))))))))))

Structure
             -      C    C    A    -  g 
gggcguuguucgU CGUCAA AUUG CUGU GAca cg g
||||||||||||| |||||| |||| |||| |||| || u
ucugcggugagcA GUAGUU UAAC GACA CUgu gc u
             A      A    C    -    a  g 


Annotation confidence Not enough data
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Genome context
scaffold_007728: 10027399-10027476 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from emu-mir-2c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature emu-miR-2c-3p

Accession MIMAT0020257
Description Echinococcus multilocularis emu-miR-2c-3p mature miRNA
Sequence 47 - UCACAGCCAAUAUUGAUGAA - 66
Evidence experimental
Illumina [2]

Mature emu-miR-2c-5p

Accession MIMAT0037437
Description Echinococcus multilocularis emu-miR-2c-5p mature miRNA
Sequence 13 - UCGUCAACAUUGCCUGUAGA - 32
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21219906
    Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
    "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
    "Int J Parasitol (2011) 41:439-448

  2. PubMed ID: 25659494
    High-throughput characterization of Echinococcus spp. metacestode miRNomes
    "Cucher M, Macchiaroli N, Kamenetzky L, Maldonado L, Brehm K, Rosenzvit MC"
    "Int J Parasitol (2015) 45:253-267