Stem-loop emu-mir-9

Accession

MI0017804

Description

Echinococcus multilocularis emu-mir-9 precursor miRNA

Gene family

MIPF0000014; mir-9

Sequence

uaguugccauUCUUUGGUUAUCUAGCUGUGUGagguuuagcuucagucagcucuuauuuucaCAAGGCUAGAUUUCCAAACAAAcgcaucuaa
(((.(((..((.(((((..((((((((.(((((((...((((......)))).....))))))).))))))))..))))).))..))).))).

Structure

-   u   ca  C     UU        G       --uuu    uc 
 uag ugc  uU UUUGG  AUCUAGCU UGUGagg     agcu  a
 ||| |||  || |||||  |||||||| |||||||     ||||   
 auc acg  AA AAACC  UAGAUCGG ACacuuu     ucga  g
a   u   cA  C     UU        A       uauuc    cu 

Annotation confidence Not enough data

Genome context

scaffold_007780: 8993270-8993362 [+]

Mature emu-miR-9-5p

• Accession: MIMAT0020261
• Description: Echinococcus multilocularis emu-miR-9-5p mature miRNA
• Sequence: 11 - UCUUUGGUUAUCUAGCUGUGUG - 32
• Evidence: experimental ; Illumina [2]

Mature emu-miR-9-3p

• Accession: MIMAT0037440
• Description: Echinococcus multilocularis emu-miR-9-3p mature miRNA
• Sequence: 63 - CAAGGCUAGAUUUCCAAACAAA - 84
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25659494
   High-throughput characterization of Echinococcus spp. metacestode miRNomes
   "Cucher M, Macchiaroli N, Kamenetzky L, Maldonado L, Brehm K, Rosenzvit MC"
   "Int J Parasitol (2015) 45:253-267