Stem-loop emu-mir-71

Accession

MI0017806

Description

Echinococcus multilocularis emu-mir-71 precursor miRNA

Gene family

MIPF0000278; mir-71

Sequence

uuggcagucaucucgUGAAAGACGAUGGUAGUGAGAuacagaggaaucgagcaUCUUGCUACUCCGUCUUUUCCUaagaugcugcu
..(((((.(((((...((((((((..(((((((((((.(.((....))..).))))))))))).))))))))....))))))))))

Structure

uu     u     -cgU        AU           a -a  g 
  ggcag caucu    GAAAGACG  GGUAGUGAGAu c  ga g
  ||||| |||||    ||||||||  ||||||||||| |  ||  
  ucguc guaga    UUUUCUGC  UCAUCGUUCUa g  cu a
--     -     aUCC        -C           c ag  a 

Annotation confidence Not enough data

Genome context

scaffold_007728: 10027494-10027579 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from emu-mir-71

Mature emu-miR-71-5p

• Accession: MIMAT0020263
• Description: Echinococcus multilocularis emu-miR-71-5p mature miRNA
• Sequence: 16 - UGAAAGACGAUGGUAGUGAGA - 36
• Evidence: experimental ; Illumina [2]

Mature emu-miR-71-3p

• Accession: MIMAT0037442
• Description: Echinococcus multilocularis emu-miR-71-3p mature miRNA
• Sequence: 54 - UCUUGCUACUCCGUCUUUUCCU - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25659494
   High-throughput characterization of Echinococcus spp. metacestode miRNomes
   "Cucher M, Macchiaroli N, Kamenetzky L, Maldonado L, Brehm K, Rosenzvit MC"
   "Int J Parasitol (2015) 45:253-267