miRBase entry: emu-mir-87

Stem-loop emu-mir-87


Accession
MI0017807
Description
Echinococcus multilocularis emu-mir-87 precursor miRNA
Gene family
MIPF0000152; mir-87


Sequence

CCACCUGUCAUUUUGCUCGAACCagaguuauucuuggcgucauccaucucucgaaggauguuugcuagguugGUGAGCAAAGUUUCAGGUGU
.((((((..(((((((((..(((((.......(((((((.(((((.((....)).)))))..)))))))))))))))))))))..)))))).

Structure
C      UC         GA     aguuauu       -u     a  u 
 CACCUG  AUUUUGCUC  ACCag       cuuggcg  caucc uc c
 ||||||  |||||||||  |||||       |||||||  ||||| ||  
 GUGGAC  UGAAACGAG  UGguu       ggaucgu  guagg ag u
U      UU         --     -------       uu     a  c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_007780: 2330314-2330405 [-]

Database links

Mature emu-miR-87-3p

Accession MIMAT0020264
Description Echinococcus multilocularis emu-miR-87-3p mature miRNA
Sequence 73 - GUGAGCAAAGUUUCAGGUGU - 92
Evidence not_experimental

Mature emu-miR-87-5p

Accession MIMAT0037443
Description Echinococcus multilocularis emu-miR-87-5p mature miRNA
Sequence 1 - CCACCUGUCAUUUUGCUCGAACC - 23
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21219906
    Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
    "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
    "Int J Parasitol (2011) 41:439-448

  2. PubMed ID: 25659494
    High-throughput characterization of Echinococcus spp. metacestode miRNomes
    "Cucher M, Macchiaroli N, Kamenetzky L, Maldonado L, Brehm K, Rosenzvit MC"
    "Int J Parasitol (2015) 45:253-267