Stem-loop emu-mir-219

Accession

MI0017814

Description

Echinococcus multilocularis emu-mir-219 precursor miRNA

Gene family

MIPF0000044; mir-219

Sequence

agugcucUGAUUGUCCAUUCGCAUUUCUUGcugcucucguguacaauucacuguucuucaAGAUGUGUGUAUGGGCAUCGCAguacu
((((((.((((.((((((.(((((.(((((..(..(..(((.......))).)..)..))))).))))).)))))))))).))))))

Structure

      c    U      U     U     cu cu uc   ua 
agugcu UGAU GUCCAU CGCAU UCUUG  g  c  gug  c
|||||| |||| |||||| ||||| |||||  |  |  |||  a
ucaugA GCUA CGGGUA GUGUG AGAac  c  g  cac  a
      C    -      U     U     uu uu -u   uu 

Annotation confidence Not enough data

Genome context

contig_62349: 2327646-2327732 [-]

Mature emu-miR-219-5p

• Accession: MIMAT0020271
• Description: Echinococcus multilocularis emu-miR-219-5p mature miRNA
• Sequence: 8 - UGAUUGUCCAUUCGCAUUUCUUG - 30
• Evidence: experimental ; Illumina [2]

Mature emu-miR-219-3p

• Accession: MIMAT0037449
• Description: Echinococcus multilocularis emu-miR-219-3p mature miRNA
• Sequence: 61 - AGAUGUGUGUAUGGGCAUCGCA - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25659494
   High-throughput characterization of Echinococcus spp. metacestode miRNomes
   "Cucher M, Macchiaroli N, Kamenetzky L, Maldonado L, Brehm K, Rosenzvit MC"
   "Int J Parasitol (2015) 45:253-267