Stem-loop emu-mir-277a

Accession

MI0017815

Description

Echinococcus multilocularis emu-mir-277a precursor miRNA

Gene family

MIPF0001221; mir-277_2

Sequence

ggguagaaagugccuuuuacaacaugcugccucuaugagauccacuuauguuugUAAAUGCAUUUUCUGGCCCGUAacc
(((((((((((((..(((((((((((.((..(((...)))..))..)))).))))))).))))))))).))))......

Structure

------    -         cu       -    -c  cc   a 
      gggu agaaagugc  uuuacaa caug  ug  ucu  
      |||| |||||||||  ||||||| ||||  ||  ||| u
      CCCG UCUUUUACG  AAAUguu guau  ac  aga  
ccaAUG    G         -U       u    uc  cu   g 

Annotation confidence Not enough data

Genome context

scaffold_007768: 4971960-4972038 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from emu-mir-277a

Mature emu-miR-277a-3p

• Accession: MIMAT0020272
• Description: Echinococcus multilocularis emu-miR-277a-3p mature miRNA
• Sequence: 55 - UAAAUGCAUUUUCUGGCCCGUA - 76
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25659494
   High-throughput characterization of Echinococcus spp. metacestode miRNomes
   "Cucher M, Macchiaroli N, Kamenetzky L, Maldonado L, Brehm K, Rosenzvit MC"
   "Int J Parasitol (2015) 45:253-267