Stem-loop emu-mir-4989

Accession

MI0017818

Description

Echinococcus multilocularis emu-mir-4989 precursor miRNA

Gene family

MIPF0001239; mir-4989

Sequence

acgcUGGGUAGUCGUUGCAUUUCCacacugcugcaagguagcagcugaaagagggugAAAAUGCACCAACUAUCUGAGAu
...(((((((((.(.(((((((.(((.(((((((......)))))......)).))).))))))).).))))))).))..

Structure

acg  -       C U       C   a  ------     aa 
   cU GGGUAGU G UGCAUUU Cac cu      gcugc  g
   || ||||||| | ||||||| ||| ||      |||||   
   GA UCUAUCA C ACGUAAA gug ga      cgacg  g
-uA  G       A C       A   g  gaaagu     au 

Annotation confidence Not enough data

Genome context

scaffold_007768: 4972095-4972174 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from emu-mir-4989

Mature emu-miR-4989-3p

• Accession: MIMAT0020275
• Description: Echinococcus multilocularis emu-miR-4989-3p mature miRNA
• Sequence: 58 - AAAAUGCACCAACUAUCUGAGA - 79
• Evidence: experimental ; Illumina [2]

Mature emu-miR-4989-5p

• Accession: MIMAT0037452
• Description: Echinococcus multilocularis emu-miR-4989-5p mature miRNA
• Sequence: 5 - UGGGUAGUCGUUGCAUUUCC - 24
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25659494
   High-throughput characterization of Echinococcus spp. metacestode miRNomes
   "Cucher M, Macchiaroli N, Kamenetzky L, Maldonado L, Brehm K, Rosenzvit MC"
   "Int J Parasitol (2015) 45:253-267