miRBase entry: gma-MIR160c

Stem-loop gma-MIR160c


Accession
MI0017822
Description
Glycine max gma-MIR160c precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
20 open access papers mention gma-MIR160c
(59 sentences)

Sequence

UGCCUGGCUCCCUGUAUGCCauuugcagagcccaucaggacagugauggccuuaacgaauggcgugcgaggagccaugcauguugugcguu
(((.(((((((.(((((((((((((..(((.((((((......)))))).)))..))))))))))))).))))))).)))...........

Structure
-----------   C       C             ca   c      gg 
           UGC UGGCUCC UGUAUGCCauuug  gag ccauca  a
           ||| ||||||| |||||||||||||  ||| ||||||   
           acg accgagg gcgugcgguaagc  uuc gguagu  c
uugcguguugu   u       a             aa   c      ga 


Annotation confidence Not enough data
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Genome context
chr19: 43999110-43999200 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gma-MIR160c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR160c

Accession MIMAT0020971
Description Glycine max gma-miR160c mature miRNA
Sequence 1 - UGCCUGGCUCCCUGUAUGCC - 20
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 21504877
    MicroRNAs in the shoot apical meristem of soybean
    "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
    "J Exp Bot (2011) 62:2495-2506

  2. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153