miRBase entry: gma-MIR162b

Stem-loop gma-MIR162b


Accession
MI0017825
Description
Glycine max gma-MIR162b precursor miRNA
Gene family
MIPF0000127; MIR162_1

Literature search
10 open access papers mention gma-MIR162b
(15 sentences)

Sequence

ugaggugaagucacuggaggcagcgguucaucgaucucuuccugaauuugguuguggaagaacacaaagcaagaaucggUCGAUAAACCUCUGCAUCCAGcgcucacuuu
.(((((((.(.(.(((((.((((.((((.(((((((..(((.((..(((((((.......))).)))).)).)))..))))))).)))).)))).))))).)))))))))

Structure
u       a u a     g    c    c       uc   c  aa    -   gu 
 gagguga g c cugga gcag gguu aucgauc  uuc ug  uuug guu  g
 ||||||| | | ||||| |||| |||| |||||||  ||| ||  |||| |||  g
 uuucacu c g GACCU CGUC CCAA UAGCUgg  aag ac  aaac caa  a
-       - - c     A    U    A       cu   a  -g    a   ga 


Annotation confidence Not enough data
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Genome context
chr5: 1431946-1432055 [+]

Database links

Mature gma-miR162b

Accession MIMAT0020974
Description Glycine max gma-miR162b mature miRNA
Sequence 80 - UCGAUAAACCUCUGCAUCCAG - 100
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  2. PubMed ID: 21504877
    MicroRNAs in the shoot apical meristem of soybean
    "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
    "J Exp Bot (2011) 62:2495-2506