Stem-loop gma-MIR319e

Accession

MI0017843

Description

Glycine max gma-MIR319e precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

17 open access papers mention gma-MIR319e
(42 sentences)

Sequence

auaguugaagagagcuuccuucaguccacucauggauggguaagggguuagaauuagcugcugacucauucauucaaacacaauagaucuggcaucaugauaugcuauugugaaugugugaaugaugcgggagguaaauuucuuccuuuuccugucugugcUUGGACUGAAGGGAGCUCCCucuaacugu
(((((((.((.(((((((((((((((((..((((((((((.((((((..(((((((.((.(((..((((((((.((..(((((((((((((....)).)))...))))))))..)).))))))))..))).)).)))..)))).))))))))))))))))..))))))))))))))))).)).)))))))

Structure

       a  a                 cu          u      uu    --   g  g   ac        u  aa        ---   -  g 
auaguug ag gagcuuccuucagucca  cauggauggg aagggg  agaa  uua cu cug  ucauucau ca  cacaauag   auc ug c
||||||| || |||||||||||||||||  |||||||||| ||||||  ||||  ||| || |||  |||||||| ||  ||||||||   ||| ||  
ugucaau uC CUCGAGGGAAGUCAGGU  gugucugucc uuuucc  ucuu  aau ga ggc  aguaagug gu  guguuauc   uag ac a
       c  C                 Uc          -      -u    ua   g  g   gu        u  aa        gua   u  u 

Annotation confidence Not enough data

Genome context

chr14: 47276795-47276984 [+]

Mature gma-miR319e

• Accession: MIMAT0020993
• Description: Glycine max gma-miR319e mature miRNA
• Sequence: 162 - UUGGACUGAAGGGAGCUCCC - 181
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506