miRBase entry: gma-MIR2118a

Stem-loop gma-MIR2118a


Accession
MI0017849
Description
Glycine max gma-MIR2118a precursor miRNA
Gene family
MIPF0000745; MIR2118

Literature search
15 open access papers mention gma-MIR2118a
(44 sentences)

Sequence

aagggaaagggagaagagcuugaggaagugaugGGAGAUGGGAGGGUCGGUAAAGaauauaucugagacucgacucaaucucgaucucucucaguguuguguuguuuuguuuauccuuUUGCCGAUUCCACCCAUUCCUaugauuuccuucgguuccucucuuuccacuc
.((((((((((((..(((((.((((((((.(((((((.((((.((((((((((((((((((.((((((.((((.......))))....))))))...)))))).............))))))))).))).))))))))))).)))))))).))))))))))))))).)).

Structure
a  -          aa     u        g       A    A   -         -------------      --u      ---c    cu 
 ag ggaaagggag  gagcu gaggaagu augGGAG UGGG GGG UCGGUAAAG             aauaua   cugaga    ucga  c
 || ||||||||||  ||||| |||||||| ||||||| |||| ||| |||||||||             ||||||   ||||||    ||||  a
 uc ccuuucucuc  cuugg uuccuuua uaUCCUU ACCC CCU AGCCGUUuu             uugugu   gacucu    agcu  a
c  a          --     c        g       -    A   U         ccuauuuguuuug      ugu      cucu    cu 


Annotation confidence Not enough data
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Genome context
chr20: 36443544-36443713 [+]

Database links

Mature gma-miR2118a-3p

Accession MIMAT0020999
Description Glycine max gma-miR2118a-3p mature miRNA
Sequence 119 - UUGCCGAUUCCACCCAUUCCU - 139
Evidence experimental
454 [1], Illumina [2-4]

Mature gma-miR2118a-5p

Accession MIMAT0022981
Description Glycine max gma-miR2118a-5p mature miRNA
Sequence 34 - GGAGAUGGGAGGGUCGGUAAAG - 55
Evidence experimental
Illumina [3-4]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  2. PubMed ID: 21504877
    MicroRNAs in the shoot apical meristem of soybean
    "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
    "J Exp Bot (2011) 62:2495-2506

  3. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553

  4. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153